3 papers
q-bio.BM2025
Multi-view biomedical foundation models for molecule-target and property prediction
Parthasarathy Suryanarayanan, Yunguang Qiu, Shreyans Sethi +15
Quality molecular representations are key to foundation model development in bio-medical research. Previous efforts have typically focused on a single representation or molecular v…
q-bio.GN2025
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
Hongyang Li, Sanjoy Dey, Bum Chul Kwon +7
Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of…
cs.LG2025
Genetics-Driven Personalized Disease Progression Model
Haoyu Yang, Sanjoy Dey, Pablo Meyer
Modeling disease progression through multiple stages is critical for clinical decision-making for chronic diseases, e.g., cancer, diabetes, chronic kidney diseases, and so on. Exis…