72 citations · 312 across the 15 of their papers we have counts for
15 papers
Vectorial active matter on the lattice: polar condensates and nematic filaments
Josué Manik Nava-Sedeño, Haralampos Hatzikirou, Anja Voß-Böhme +3
We introduce a novel lattice-gas cellular automaton (LGCA) for compressible vectorial active matter with polar and nematic velocity alignment. Interactions are, by construction, ze…
A Wall-time Minimizing Parallelization Strategy for Approximate Bayesian Computation
Emad Alamoudi, Felipe Reck, Nils Bundgaard +4
Approximate Bayesian Computation (ABC) is a widely applicable and popular approach to estimating unknown parameters of mechanistic models. As ABC analyses are computationally expen…
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
Letter to the Editor and Comments on: Intravital dynamic and correlative imaging reveals diffusion-dominated canalicular and flow-augmented ductular bile flux
Lutz Brusch, Yannis Kalaidzidis, Kirstin Meyer +2
Bile, the central metabolic product of the liver, is secreted by hepatocytes into bile canaliculi (BC), tubular subcellular structures of 0.5-2 m diameter which are formed by th…
An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action
Hartwig Anzt, Felix Bach, Stephan Druskat +40
Research software has become a central asset in academic research. It optimizes existing and enables new research methods, implements and embeds research knowledge, and constitutes…
Quantification of Nematic Cell Polarity in Three-dimensional Tissues
André Scholich, Simon Syga, Hernán Morales-Navarrete +9
How epithelial cells coordinate their polarity to form functional tissues is an open question in cell biology. Here, we characterize a unique type of polarity found in liver tissue…