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20152026
most citedMore Bang for Your Buck: Improved use of GPU Nodes for GROMACS 2018

431 citations · 934 across the 11 of their papers we have counts for

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5 papers · 1 filter

physics.comp-ph2024★ 3 cited

Bayesian electron density determination from sparse and noisy single-molecule X-ray scattering images

Steffen Schultze, Helmut Grubmüller

Single molecule X-ray scattering experiments using free electron lasers hold the potential to resolve both single structures and structural ensembles of biomolecules. However, mole…

physics.comp-ph2023

Why solvent response contributions to solvation free energies are compatible with Ben-Naim's theorem

Leonard P. Heinz, Helmut Grubmüller

We resolve a seeming paradox arising from a common misinterpretation of Ben-Naim's theorem, which rests on a pairwise decomposition of the Hamiltonian of a molecular solute/solvent…

physics.comp-ph2021★ 2 cited

Small Sample Limit of the Bennett Acceptance Ratio Method and the Variationally Derived Intermediates

Martin Reinhardt, Helmut Grubmüller

Free energy calculations based on atomistic Hamiltonians provide microscopic insight into the thermodynamic driving forces of biophysical or condensed matter systems. Many approach…

physics.comp-ph2020★ 15 cited

GROMACS Implementation of Free Energy Calculations with Non-Pairwise Variationally Derived Intermediates

Martin Reinhardt, Helmut Grubmüller

Gradients in free energies are the driving forces of physical and biochemical systems. To predict free energy differences with high accuracy, Molecular Dynamics (MD) and other meth…

physics.comp-ph2020★ 4 cited

Variationally Derived Intermediates for Correlated Free Energy Estimates between Intermediate States

Martin Reinhardt, Helmut Grubmüller

Free energy difference calculations based on atomistic simulations generally improve in accuracy when sampling from a sequence of intermediate equilibrium thermodynamic states that…