32 citations · 100 across the 16 of their papers we have counts for
6 papers · 1 filter
Incorporating Pre-training Paradigm for Antibody Sequence-Structure Co-design
Kaiyuan Gao, Lijun Wu, Jinhua Zhu +8
Antibodies are versatile proteins that can bind to pathogens and provide effective protection for human body. Recently, deep learning-based computational antibody design has attrac…
Tailoring Molecules for Protein Pockets: a Transformer-based Generative Solution for Structured-based Drug Design
Kehan Wu, Yingce Xia, Yang Fan +7
Structure-based drug design is drawing growing attentions in computer-aided drug discovery. Compared with the virtual screening approach where a pre-defined library of compounds ar…
Randomized Kaczmarz Method for Single Particle X-ray Image Phase Retrieval
Y. Xian, H. Liu, X. Tai +1
In this paper, we investigate phase retrieval algorithm for the single particle X-ray imaging data. We present a variance-reduced randomized Kaczmarz (VR-RK) algorithm for phase re…
SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction
Qizhi Pei, Lijun Wu, Jinhua Zhu +6
Accurate prediction of Drug-Target Affinity (DTA) is of vital importance in early-stage drug discovery, facilitating the identification of drugs that can effectively interact with…
Driving atomic structures of molecules, crystals, and complex systems with local similarity kernels
Ziheng Lu, Wenlei Shi, Lixin Sun +2
Accessing structures of molecules, crystals, and complex interfaces with atomic level details is vital to the understanding and engineering of materials, chemical reactions, and bi…
Direct Molecular Conformation Generation
Jinhua Zhu, Yingce Xia, Chang Liu +9
Molecular conformation generation aims to generate three-dimensional coordinates of all the atoms in a molecule and is an important task in bioinformatics and pharmacology. Previou…