18 papers
PRIME-SVR: Physics-infoRmed Implicit Multi-Echo Slice-to-Volume Reconstruction for Fetal T2 mapping
Busra Bulut, Maik Dannecker, Thomas Sanchez +14
Slice-to-volume reconstruction (SVR) is the standard method for obtaining high-resolution (HR) 3D fetal brain volumes from motion-corrupted 2D MRI slice stacks acquired in multiple…
Evaluating Synthetic Data Generation for Domain Generalization in Fetal Brain MRI Segmentation
Vladyslav Zalevskyi, Thomas Sanchez, Margaux Roulet +10
Fetal brain tissue segmentation from magnetic resonance imaging (MRI) is crucial for studying neurodevelopment, but remains challenging due to data heterogeneity and limited annota…
Towards Brain MRI Foundation Models for the Clinic: Findings from the FOMO25 Challenge
Asbjørn Munk, Stefano Cerri, Vardan Nersesjan +81
Clinical deployment of automated brain MRI analysis faces a fundamental challenge: clinical data is heterogeneous and noisy, and high-quality labels are prohibitively costly to obt…
Fetpype: An Open-Source Pipeline for Reproducible Fetal Brain MRI Analysis
Thomas Sanchez, Gerard MartÃ-Juan, David Meunier +6
Fetal brain magnetic resonance imaging (MRI) is crucial for assessing neurodevelopment in utero. However, fetal MRI analysis remains technically challenging due to fetal motion, lo…
Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg
Ziyao Shang, Misha Kaandorp, Kelly Payette +9
Magnetic resonance imaging (MRI) has played a crucial role in fetal neurodevelopmental research. Structural annotations of MR images are an important step for quantitative analysis…
From 100,000+ images to winning the first brain MRI foundation model challenges: Sharing lessons and models
Pedro M. Gordaliza, Jaume Banus, Benoît Gérin +4
Developing Foundation Models for medical image analysis is essential to overcome the unique challenges of radiological tasks. The first challenges of this kind for 3D brain MRI, SS…