3 papers
cs.SE2025
From Articles to Code: On-Demand Generation of Core Algorithms from Scientific Publications
Cameron S. Movassaghi, Amanda Momenzadeh, Jesse G. Meyer
Maintaining software packages imposes significant costs due to dependency management, bug fixes, and versioning. We show that rich method descriptions in scientific publications ca…
q-bio.QM2025
Single-Cell Proteomics Using Mass Spectrometry
Amanda Momenzadeh, Jesse G. Meyer
Single-cell proteomics (SCP) is transforming our understanding of biological complexity by shifting from bulk proteomics, where signals are averaged over thousands of cells, to the…
cs.LG2025
AttentionSmithy: A Modular Framework for Rapid Transformer Development and Customization
Caleb Cranney, Jesse G. Meyer
Transformer architectures have transformed AI applications but remain complex to customize for domain experts lacking low-level implementation expertise. We introduce AttentionSmit…