4 papers
CARTEpigenoQC: A Quality Control Toolkit for CAR-T Single-Cell Epigenomic Data
Kaitao Lai
CARTEpigenoQC is an R-based toolkit designed to streamline quality control (QC) for single-cell epigenomic datasets involving Chimeric Antigen Receptor (CAR)-engineered T cells. Wi…
SimOmics: A Simulation Toolkit for Multivariate and Multi-Omics Data
Kaitao Lai
SimOmics is an R package designed to generate realistic, multivariate, and multi-omics synthetic datasets. It is intended for use in benchmarking, method development, and reproduci…
AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
Kaitao Lai
AMRScan is a hybrid bioinformatics toolkit implemented in both R and [Nextflow](https://www.nextflow.io/) for the rapid and reproducible detection of antimicrobial resistance (AMR)…
MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection
Kaitao Lai
MicroTrace is an open-source R tool that performs SNP-based hierarchical clustering to detect potential transmission clusters from pathogen whole-genome sequencing (WGS) data. Desi…