2 papers
physics.bio-ph2025
Particle-based simulation of non-elementary bimolecular kinetics
Taylor Kearney, Mark B. Flegg
Particle-based simulations are an essential tool for the study of biochemical systems for scales between molecular/Brownian dynamics and the reaction-diffusion master equation. The…
math.NA2025
Accurate stochastic simulation of nonlinear reactions between closest particles
Taylor Kearney, Ricardo Ruiz-Baier, Mark B. Flegg
We study a system of diffusing point particles in which any triplet of particles reacts and is removed from the system when the relative proximity of the constituent particles sati…