2 papers
q-bio.QM2018
A Step-by-Step Guide to Using BioNetFit
William S. Hlavacek, Jennifer Longo, Lewis R. Baker +9
BioNetFit is a software tool designed for solving parameter identification problems that arise in the development of rule-based models. It solves these problems through curve fitti…
q-bio.QM2018
Generalizing Gillespie's direct method to enable network-free simulations
Ryan Suderman, Eshan D. Mitra, Yen Ting Lin +3
Gillespie's direct method for stochastic simulation of chemical kinetics is a staple of computational systems biology research. However, the algorithm requires explicit enumeration…