249 citations · 291 across the 3 of their papers we have counts for
3 papers
Evaluation of Parallel Tempering to Accelerate Bayesian Parameter Estimation in Systems Biology
Sanjana Gupta, Liam Hainsworth, Justin S. Hogg +2
Models of biological systems often have many unknown parameters that must be determined in order for model behavior to match experimental observations. Commonly-used methods for pa…
BioNetGen 2.2: Advances in Rule-Based Modeling
Leonard A. Harris, Justin S. Hogg, Jose-Juan Tapia +7
BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model spe…
Exact hybrid particle/population simulation of rule-based models of biochemical systems
Justin S. Hogg, Leonard A. Harris, Lori J. Stover +2
Detailed modeling and simulation of biochemical systems is complicated by the problem of combinatorial complexity, an explosion in the number of species and reactions due to myriad…