2 papers
q-bio.BM2025
Pi-SAGE: Permutation-invariant surface-aware graph encoder for binding affinity prediction
Sharmi Banerjee, Mostafa Karimi, Melih Yilmaz +4
Protein surface fingerprint encodes chemical and geometric features that govern protein-protein interactions and can be used to predict changes in binding affinity between two prot…
cs.LG2025
AffinityFlow: Guided Flows for Antibody Affinity Maturation
Can Chen, Karla-Luise Herpoldt, Chenchao Zhao +4
Antibodies are widely used as therapeutics, but their development requires costly affinity maturation, involving iterative mutations to enhance binding affinity.This paper explores…