95 citations · 232 across the 8 of their papers we have counts for
10 papers
Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem
Rok Hribar, Timotej Hrga, Gregor Papa +4
In this paper, we consider the symmetric multi-type non-negative matrix tri-factorization problem (SNMTF), which attempts to factorize several symmetric non-negative matrices simul…
Integrative Data Analytic Framework to Enhance Cancer Precision Medicine
Thomas Gaudelet, Noel Malod-Dognin, Natasa Przulj
With the advancement of high-throughput biotechnologies, we increasingly accumulate biomedical data about diseases, especially cancer. There is a need for computational models and…
Functional geometry of protein-protein interaction networks
Noel Malod-Dognin, Natasa Przulj
Motivation: Protein-protein interactions (PPIs) are usually modelled as networks. These networks have extensively been studied using graphlets, small induced subgraphs capturing th…
Higher order molecular organisation as a source of biological function
Thomas Gaudelet, Noel Malod-Dognin, Natasa Przulj
Molecular interactions have widely been modelled as networks. The local wiring patterns around molecules in molecular networks are linked with their biological functions. However,…
Predictive Functional Connectivity of Real-World Systems
Anida Sarajlić, Noël Malod-Dognin, Ömer Nebil Yaveroğlu +1
We are flooded with large-scale dynamic networked data. Analyses requiring exact comparisons between networks are computationally intractable, so new methodologies are sought. We e…
FUSE: Multiple Network Alignment via Data Fusion
Vladimir Gligorijević, Noël Malod-Dognin, Nataša Pržulj
Discovering patterns in networks of protein-protein interactions (PPIs) is a central problem in systems biology. Alignments between these networks aid functional understanding as t…