15 citations · 15 across the 3 of their papers we have counts for
3 papers
AIomics: exploring more of the proteome using mass spectral libraries extended by AI
Lewis Y. Geer, Joel Lapin, Douglas J. Slotta +2
The unbounded permutations of biological molecules, including proteins and their constituent peptides, presents a dilemma in identifying the components of complex biosamples. Seque…
Searching by index for similar sequences: the SEQR algorithm
David I. Hurwitz, Lianyi Han, Lewis Y. Geer
This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this meth…
Open Mass Spectrometry Search Algorithm
Lewis Y. Geer, Sanford P. Markey, Jeffrey A. Kowalak +6
Large numbers of MS/MS peptide spectra generated in proteomics experiments require efficient, sensitive and specific algorithms for peptide identification. In the Open Mass Spectro…