2 papers
q-bio.BM2004
Untangling influences of hydrophobicity on protein sequences and structures
Mehdi Yahyanejad, Christopher B. Burge, Mehran Kardar
We fit the Fourier transforms of solvent accessibility and hydrophobicity profiles of a representative set of proteins to a joint multi-variable Gaussian. This allows us to separat…
physics.bio-ph2001
DNA Sequence Evolution with Neighbor-Dependent Mutation
Peter F. Arndt, Christopher B. Burge, Terence Hwa
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this cl…