243 citations · 244 across the 3 of their papers we have counts for
3 papers
Sashimi plots: Quantitative visualization of RNA sequencing read alignments
Yarden Katz, Eric T. Wang, Jacob Silterra +5
We introduce Sashimi plots, a quantitative multi-sample visualization of mRNA sequencing reads aligned to gene annotations. Sashimi plots are made using alignments (stored in the S…
Untangling influences of hydrophobicity on protein sequences and structures
Mehdi Yahyanejad, Christopher B. Burge, Mehran Kardar
We fit the Fourier transforms of solvent accessibility and hydrophobicity profiles of a representative set of proteins to a joint multi-variable Gaussian. This allows us to separat…
DNA Sequence Evolution with Neighbor-Dependent Mutation
Peter F. Arndt, Christopher B. Burge, Terence Hwa
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this cl…