5 papers · 1 filter
HoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models
Aakash Tripathi, Asim Waqas, Matthew B. Schabath +2
HONeYBEE (Harmonized ONcologY Biomedical Embedding Encoder) is an open-source framework that integrates multimodal biomedical data for oncology applications. It processes clinical…
Explainable AI in Genomics: Transcription Factor Binding Site Prediction with Mixture of Experts
Aakash Tripathi, Ian E. Nielsen, Muhammad Umer +2
Transcription Factor Binding Site (TFBS) prediction is crucial for understanding gene regulation and various biological processes. This study introduces a novel Mixture of Experts…
EAGLE: Efficient Alignment of Generalized Latent Embeddings for Multimodal Survival Prediction with Interpretable Attribution Analysis
Aakash Tripathi, Asim Waqas, Matthew B. Schabath +2
Accurate cancer survival prediction requires integration of diverse data modalities that reflect the complex interplay between imaging, clinical parameters, and textual reports. Ho…
Self-Normalizing Foundation Model for Enhanced Multi-Omics Data Analysis in Oncology
Asim Waqas, Aakash Tripathi, Sabeen Ahmed +6
Multi-omics research has enhanced our understanding of cancer heterogeneity and progression. Investigating molecular data through multi-omics approaches is crucial for unraveling t…
Privacy Preserving Federated Learning in Medical Imaging with Uncertainty Estimation
Nikolas Koutsoubis, Yasin Yilmaz, Ravi P. Ramachandran +2
Machine learning (ML) and Artificial Intelligence (AI) have fueled remarkable advancements, particularly in healthcare. Within medical imaging, ML models hold the promise of improv…