most citedGateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping

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cs.AR2024★ 1 cited

MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing

Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9

Metagenomics has led to significant advances in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relative…

cs.AR2023★ 1 cited

GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping

Julien Eudine, Mohammed Alser, Gagandeep Singh +2

Motivation: Read mapping is a computationally expensive process and a major bottleneck in genomics analyses. The performance of read mapping is mainly limited by the performance of…