2 papers
q-bio.BM2026
Harmonic Torsional Diffusion for Protein-Ligand Flexible Docking
Maksim Zhdanov, Pavel Strashnov, Vladislav Kurenkov
Molecular docking requires reasoning jointly about ligand pose and protein flexibility. Most diffusion-based docking models predict torsional updates with generic Euclidean heads t…
cs.LG2025
Diffusion on language model encodings for protein sequence generation
Viacheslav Meshchaninov, Pavel Strashnov, Andrey Shevtsov +4
Protein sequence design has seen significant advances through discrete diffusion and autoregressive approaches, yet the potential of continuous diffusion remains underexplored. Her…