2 papers
q-bio.PE2025
The structure of deviations from maximum parsimony for densely-sampled data and applications for clade support estimation
William Howard-Snyder, Will Dumm, Mary Barker +5
How do phylogenetic reconstruction algorithms go astray when they return incorrect trees? This simple question has not been answered in detail, even for maximum parsimony (MP), the…
q-bio.PE2024
Finding high posterior density phylogenies by systematically extending a directed acyclic graph
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay +7
Bayesian phylogenetics typically estimates a posterior distribution, or aspects thereof, using Markov chain Monte Carlo methods. These methods integrate over tree space by applying…