466 citations · 665 across the 35 of their papers we have counts for
45 papers
Distinguishing Phylogenetic Level-2 Networks with Quartets and Inter-Taxon Quartet Distances
Niels Holtgrefe, Elizabeth S. Allman, Hector Baños +4
The inference of phylogenetic networks, which model complex evolutionary processes including hybridization and gene flow, remains a central challenge in evolutionary biology. Until…
Beyond level-1: Identifiability of a class of galled tree-child networks
Elizabeth S. Allman, Cecile Ane, Hector Banos +1
Inference of phylogenetic networks is of increasing interest in the genomic era. However, the extent to which phylogenetic networks are identifiable from various types of data rema…
Identifying circular orders for blobs in phylogenetic networks
John A. Rhodes, Hector Banos, Jingcheng Xu +1
Interest in the inference of evolutionary networks relating species or populations has grown with the increasing recognition of the importance of hybridization, gene flow and admix…
Identifiability of Level-1 Species Networks from Gene Tree Quartets
Elizabeth S. Allman, Hector Baños, Marina Garrote-Lopez +1
When hybridization or other forms of lateral gene transfer have occurred, evolutionary relationships of species are better represented by phylogenetic networks than by trees. While…
Phylogenomic Models from Tree Symmetries
Elizabeth A. Allman, Colby Long, John A. Rhodes
A model of genomic sequence evolution on a species tree should include not only a sequence substitution process, but also a coalescent process, since different sites may evolve on…
A generalized AIC for models with singularities and boundaries
Jonathan D. Mitchell, Elizabeth S. Allman, John A. Rhodes
The Akaike information criterion (AIC) is a common tool for model selection. It is frequently used in violation of regularity conditions at parameter space singularities and bounda…