3 papers
math.CO2025
Bounding the SNPR distance between two tree-child networks using generalised agreement forests
Steven Kelk, Simone Linz, Charles Semple
Agreement forests continue to play a central role in the comparison of phylogenetic trees since their introduction more than 25 years ago. More specifically, they are used to chara…
q-bio.PE2025
Order-Dependent Dissimilarity Measures on Phylogenetic Trees
Simone Linz, Katherine St. John, Charles Semple +1
Ordered leaf attachment, Phylo2Vec, and HOP are three recently introduced vector representations for rooted phylogenetic trees where the representation is determined by an ordering…
math.CO2025
Cherry picking in forests: A new characterization for the unrooted hybrid number of two phylogenetic trees
Katharina T. Huber, Simone Linz, Vincent Moulton
Phylogenetic networks are a special type of graph which generalize phylogenetic trees and that are used to model non-treelike evolutionary processes such as recombination and hybri…