8 citations · 12 across the 4 of their papers we have counts for
4 papers
Multiscale Analysis of Count Data through Topic Alignment
Julia Fukuyama, Kris Sankaran, Laura Symul
Topic modeling is a popular method used to describe biological count data. With topic models, the user must specify the number of topics . Since there is no definitive way to ch…
Local biplots for multi-dimensional scaling, with application to the microbiome
Julia Fukuyama
We present local biplots, a an extension of the classic principal components biplot to multi-dimensional scaling. Noticing that principal components biplots have an interpretation…
Lack of evidence for a substantial rate of templated mutagenesis in B cell diversification
Julia Fukuyama, Branden J Olson, Frederick A Matsen
B cell receptor sequences diversify through mutations introduced by purpose-built cellular machinery. A recent paper has concluded that a "templated mutagenesis" process is a major…
Adaptive gPCA: A method for structured dimensionality reduction
Julia Fukuyama
When working with large biological data sets, exploratory analysis is an important first step for understanding the latent structure and for generating hypotheses to be tested in s…