2 papers
cs.LG2025
SpecMER: Fast Protein Generation with K-mer Guided Speculative Decoding
Thomas Walton, Darin Tsui, Aryan Musharaf +1
Autoregressive models have transformed protein engineering by enabling the generation of novel protein sequences beyond those found in nature. However, their sequential inference i…
cs.LG2025
SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries
Darin Tsui, Aryan Musharaf, Yigit Efe Erginbas +2
The growing adoption of machine learning models for biological sequences has intensified the need for interpretable predictions, with Shapley values emerging as a theoretically gro…