1 citations · 1 across the 3 of their papers we have counts for
3 papers
q-bio.PE2019
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs
Roland Wittler
We present a new whole-genome based approach to infer large-scale phylogenies that is alignment- and reference-free. In contrast to other methods, it does not rely on pairwise comp…
cs.DS2017
Fast and Simple Jumbled Indexing for Binary RLE Strings
Luís Cunha, Simone Dantas, Travis Gagie +3
Important papers have appeared recently on the problem of indexing binary strings for jumbled pattern matching, and further lowering the time bounds in terms of the input size woul…
cs.DS2016★ 1 cited
The SCJ small parsimony problem for weighted gene adjacencies (Extended version)
Nina Luhmann, Manuel Lafond, Annelyse Thévenin +3
Reconstructing ancestral gene orders in a given phylogeny is a classical problem in comparative genomics. Most existing methods compare conserved features in extant genomes in the…