39 citations · 39 across the 3 of their papers we have counts for
3 papers
UQSA -- An R-Package for Uncertainty Quantification and Sensitivity Analysis for Biochemical Reaction Network Models
Andrei Kramer, Federica Milinanni, Jeanette Hellgren Kotaleski +3
Biochemical reaction models describing subcellular processes generally come with a large uncertainty. To be able to account for this during the modeling process, we have developed…
ROPE: high-dimensional network modeling with robust control of edge FDR
Jonatan Kallus, Jose Sanchez, Alexandra Jauhiainen +2
Network modeling has become increasingly popular for analyzing genomic data, to aid in the interpretation and discovery of possible mechanistic components and therapeutic targets.…
Inferring Regulatory Networks by Combining Perturbation Screens and Steady State Gene Expression Profiles
Ali Shojaie, Alexandra Jauhiainen, Michael Kallitsis +1
Reconstructing transcriptional regulatory networks is an important task in functional genomics. Data obtained from experiments that perturb genes by knockouts or RNA interference c…