activity
20172023
most citedAutomated Design of Deep Learning Methods for Biomedical Image Segmentation

9.8k citations · 10.6k across the 12 of their papers we have counts for

collaborators

15 papers

cs.CV2023★ 1 cited

RecycleNet: Latent Feature Recycling Leads to Iterative Decision Refinement

Gregor Koehler, Tassilo Wald, Constantin Ulrich +6

Despite the remarkable success of deep learning systems over the last decade, a key difference still remains between neural network and human decision-making: As humans, we cannot…

cs.LG2020★ 52 cited

Contrastive Training for Improved Out-of-Distribution Detection

Jim Winkens, Rudy Bunel, Abhijit Guha Roy +10

Reliable detection of out-of-distribution (OOD) inputs is increasingly understood to be a precondition for deployment of machine learning systems. This paper proposes and investiga…

eess.IV2019★ 20 cited

A Case for the Score: Identifying Image Anomalies using Variational Autoencoder Gradients

David Zimmerer, Jens Petersen, Simon A. A. Kohl +1

Through training on unlabeled data, anomaly detection has the potential to impact computer-aided diagnosis by outlining suspicious regions. Previous work on deep-learning-based ano…

cs.CV2019

Reg R-CNN: Lesion Detection and Grading under Noisy Labels

Gregor N. Ramien, Paul F. Jaeger, Simon A. A. Kohl +1

For the task of concurrently detecting and categorizing objects, the medical imaging community commonly adopts methods developed on natural images. Current state-of-the-art object…

cs.LG2019

Unsupervised Anomaly Localization using Variational Auto-Encoders

David Zimmerer, Fabian Isensee, Jens Petersen +2

An assumption-free automatic check of medical images for potentially overseen anomalies would be a valuable assistance for a radiologist. Deep learning and especially Variational A…

eess.IV2019

Deep Probabilistic Modeling of Glioma Growth

Jens Petersen, Paul F. Jäger, Fabian Isensee +8

Existing approaches to modeling the dynamics of brain tumor growth, specifically glioma, employ biologically inspired models of cell diffusion, using image data to estimate the ass…

eess.IV2019

Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection -- Short Paper

David Zimmerer, Simon Kohl, Jens Petersen +2

Unsupervised learning can leverage large-scale data sources without the need for annotations. In this context, deep learning-based autoencoders have shown great potential in detect…

cs.CV2019★ 27 cited

A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities

Simon A. A. Kohl, Bernardino Romera-Paredes, Klaus H. Maier-Hein +5

Medical imaging only indirectly measures the molecular identity of the tissue within each voxel, which often produces only ambiguous image evidence for target measures of interest,…

cs.CV2019★ 9.8k cited

Automated Design of Deep Learning Methods for Biomedical Image Segmentation

Fabian Isensee, Paul F. Jäger, Simon A. A. Kohl +2

Biomedical imaging is a driver of scientific discovery and core component of medical care, currently stimulated by the field of deep learning. While semantic segmentation algorithm…

cs.LG2018★ 82 cited

Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection

David Zimmerer, Simon A. A. Kohl, Jens Petersen +2

Unsupervised learning can leverage large-scale data sources without the need for annotations. In this context, deep learning-based auto encoders have shown great potential in detec…

cs.CV2018★ 98 cited

Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection

Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt +4

The task of localizing and categorizing objects in medical images often remains formulated as a semantic segmentation problem. This approach, however, only indirectly solves the co…

cs.CV2018★ 268 cited

nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation

Fabian Isensee, Jens Petersen, Andre Klein +8

The U-Net was presented in 2015. With its straight-forward and successful architecture it quickly evolved to a commonly used benchmark in medical image segmentation. The adaptation…

cs.CV2018★ 151 cited

A Probabilistic U-Net for Segmentation of Ambiguous Images

Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer +6

Many real-world vision problems suffer from inherent ambiguities. In clinical applications for example, it might not be clear from a CT scan alone which particular region is cancer…

cs.NE2017

Adversarial Networks for Prostate Cancer Detection

Simon Kohl, David Bonekamp, Heinz-Peter Schlemmer +5

The large number of trainable parameters of deep neural networks renders them inherently data hungry. This characteristic heavily challenges the medical imaging community and to ma…

cs.CV2017★ 116 cited

Adversarial Networks for the Detection of Aggressive Prostate Cancer

Simon Kohl, David Bonekamp, Heinz-Peter Schlemmer +5

Semantic segmentation constitutes an integral part of medical image analyses for which breakthroughs in the field of deep learning were of high relevance. The large number of train…