95 citations · 874 across the 46 of their papers we have counts for
6 papers · 1 filter
Fourier-based classification of protein secondary structures
Jian-Jun Shu, Kian-Yan Yong
The correct prediction of protein secondary structures is one of the key issues in predicting the correct protein folded shape, which is used for determining gene function. Existin…
Identifying DNA motifs based on match and mismatch alignment information
Jian-Jun Shu, Kian Yan Yong
The conventional way of identifying DNA motifs, solely based on match alignment information, is susceptible to a high number of spurious sites. A novel scoring system has been intr…
An improved scoring matrix for multiple sequence alignment
Jian-Jun Shu, Kian Yan Yong, Weng Kong Chan
The way for performing multiple sequence alignment is based on the criterion of the maximum scored information content computed from a weight matrix, but it is possible to have two…
A statistical thin-tail test of predicting regulatory regions in the Drosophila genome
Jian-Jun Shu, Yajing Li
Background: The identification of transcription factor binding sites (TFBSs) and cis-regulatory modules (CRMs) is a crucial step in studying gene expression, but the computational…
Hypercomplex cross-correlation of DNA sequences
Jian-Jun Shu, Yajing Li
A hypercomplex representation of DNA is proposed to facilitate comparison of DNA sequences with fuzzy composition. Using hypercomplex number representation, conventional sequence a…
A statistical fat-tail test of predicting regulatory regions in the Drosophila genome
Jian-Jun Shu, Yajing Li
A statistical study of cis-regulatory modules (CRMs) is presented based on the estimation of similar-word set distribution. It is observed that CRMs tend to have a fat-tail distrib…