386 citations · 1k across the 63 of their papers we have counts for
67 papers
Routine laboratory trajectories encode the onset of organ-level complications in cancer
Jannik Lübberstedt, Krischan Braitsch, Jacqueline Lammert +21
Routine laboratory panels drawn during cancer treatment constitute longitudinal physiological recordings of organ function, yet their temporal structure is discarded by single-time…
Redefining Instance Matching: A Unified Framework for Part-Aware Matching in Panoptic Segmentation Evaluation
Erik Großkopf, Soumya Snigdha Kundu, Hendrik Möller +9
The Panoptic Quality (PQ) metric is the standard for jointly evaluating instance and semantic segmentation. However, its original definition relies on a One-to-One matching between…
Whole-body CT attenuation and volume charts from routine clinical scans via evidence-grounded LLM report filtering
Christian Wachinger, Bernhard Renger, Christopher Späth +2
Interpreting quantitative CT biomarkers, such as organ volume and tissue attenuation, requires large-scale healthy reference distributions. However, creating these is challenging b…
One Sequence to Segment Them All: Efficient Data Augmentation for CT and MRI Cross-Domain 3D Spine Segmentation
Nathan Molinier, Hendrik Möller, Thomas Dagonneau +6
Deep learning-based medical image segmentation is increasingly used to support clinical diagnosis and develop new treatment strategies. However, model performance remains limited b…
VERIDAH: Solving Enumeration Anomaly Aware Vertebra Labeling across Imaging Sequences
Hendrik Möller, Hanna Schoen, Robert Graf +14
The human spine commonly consists of seven cervical, twelve thoracic, and five lumbar vertebrae. However, enumeration anomalies may result in individuals having eleven or thirteen…
Hide-and-Seek Attribution: Weakly Supervised Segmentation of Vertebral Metastases in CT
Matan Atad, Alexander W. Marka, Lisa Steinhelfer +10
Accurate segmentation of vertebral metastasis in CT is clinically important yet difficult to scale, as voxel-level annotations are scarce and both lytic and blastic lesions often r…
Rule-based Key-Point Extraction for MR-Guided Biomechanical Digital Twins of the Spine
Robert Graf, Tanja Lerchl, Kati Nispel +7
Digital twins offer a powerful framework for subject-specific simulation and clinical decision support, yet their development often hinges on accurate, individualized anatomical mo…
CADS: A Comprehensive Anatomical Dataset and Segmentation for Whole-Body Anatomy in Computed Tomography
Murong Xu, Tamaz Amiranashvili, Fernando Navarro +30
Accurate delineation of anatomical structures in volumetric CT scans is crucial for diagnosis and treatment planning. While AI has advanced automated segmentation, current approach…
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +26
BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provi…
BraTS orchestrator : Democratizing and Disseminating state-of-the-art brain tumor image analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +34
The Brain Tumor Segmentation (BraTS) cluster of challenges has significantly advanced brain tumor image analysis by providing large, curated datasets and addressing clinically rele…
Reliable Evaluation of MRI Motion Correction: Dataset and Insights
Kun Wang, Tobit Klug, Stefan Ruschke +2
Correcting motion artifacts in MRI is important, as they can hinder accurate diagnosis. However, evaluating deep learning-based and classical motion correction methods remains fund…
Automated Thoracolumbar Stump Rib Detection and Analysis in a Large CT Cohort
Hendrik Möller, Hanna Schön, Alina Dima +10
Thoracolumbar stump ribs are one of the essential indicators of thoracolumbar transitional vertebrae or enumeration anomalies. While some studies manually assess these anomalies an…
MAGO-SP: Detection and Correction of Water-Fat Swaps in Magnitude-Only VIBE MRI
Robert Graf, Hendrik Möller, Sophie Starck +15
Volume Interpolated Breath-Hold Examination (VIBE) MRI generates images suitable for water and fat signal composition estimation. While the two-point VIBE provides water-fat-separa…
PARASIDE: An Automatic Paranasal Sinus Segmentation and Structure Analysis Tool for MRI
Hendrik Möller, Lukas Krautschick, Matan Atad +9
Chronic rhinosinusitis (CRS) is a common and persistent sinus imflammation that affects 5 - 12\% of the general population. It significantly impacts quality of life and is often di…
Efficient MedSAMs: Segment Anything in Medical Images on Laptop
Jun Ma, Feifei Li, Sumin Kim +79
Promptable segmentation foundation models have emerged as a transformative approach to addressing the diverse needs in medical images, but most existing models require expensive co…
Detecting Unforeseen Data Properties with Diffusion Autoencoder Embeddings using Spine MRI data
Robert Graf, Florian Hunecke, Soeren Pohl +12
Deep learning has made significant strides in medical imaging, leveraging the use of large datasets to improve diagnostics and prognostics. However, large datasets often come with…
Counterfactual Explanations for Medical Image Classification and Regression using Diffusion Autoencoder
Matan Atad, David Schinz, Hendrik Moeller +6
Counterfactual explanations (CEs) aim to enhance the interpretability of machine learning models by illustrating how alterations in input features would affect the resulting predic…
ISLES'24 -- A Real-World Longitudinal Multimodal Stroke Dataset
Evamaria Olga Riedel, Ezequiel de la Rosa, The Anh Baran +18
Stroke remains a leading cause of global morbidity and mortality, imposing a heavy socioeconomic burden. Advances in endovascular reperfusion therapy and CT and MR imaging for trea…
ISLES'24: Final Infarct Prediction with Multimodal Imaging and Clinical Data. Where Do We Stand?
Ezequiel de la Rosa, Ruisheng Su, Mauricio Reyes +37
Accurate estimation of brain infarction (i.e., irreversibly damaged tissue) is critical for guiding treatment decisions in acute ischemic stroke. Reliable infarct prediction inform…
Neural Network Surrogate and Projected Gradient Descent for Fast and Reliable Finite Element Model Calibration: a Case Study on an Intervertebral Disc
Matan Atad, Gabriel Gruber, Marx Ribeiro +7
Accurate calibration of finite element (FE) models is essential across various biomechanical applications, including human intervertebral discs (IVDs), to ensure their reliability…
VIBESegmentator: Full Body MRI Segmentation for the NAKO and UK Biobank
Robert Graf, Paul-Sören Platzek, Evamaria Olga Riedel +17
Objectives: To present a publicly available deep learning-based torso segmentation model that provides comprehensive voxel-wise coverage, including delineations that extend to the…
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge
Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew +55
Diffusion-weighted MRI (DWI) is essential for stroke diagnosis, treatment decisions, and prognosis. However, image and disease variability hinder the development of generalizable A…
Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes
Poulami Sinhamahapatra, Suprosanna Shit, Anjany Sekuboyina +7
Vertebral fracture grading classifies the severity of vertebral fractures, which is a challenging task in medical imaging and has recently attracted Deep Learning (DL) models. Only…
Numerical simulation of individual coil placement -- A proof-of-concept study for the prediction of recurrence after aneurysm coiling
Julian Schwarting, Fabian Holzberger, Markus Muhr +4
Rupture of intracranial aneurysms results in severe subarachnoidal hemorrhage, which is associated with high morbidity and mortality. Neurointerventional occlusion of the aneurysm…