3 papers
cs.LG2025
UncertainGen: Uncertainty-Aware Representations of DNA Sequences for Metagenomic Binning
Abdulkadir Celikkanat, Andres R. Masegosa, Mads Albertsen +1
Metagenomic binning aims to cluster DNA fragments from mixed microbial samples into their respective genomes, a critical step for downstream analyses of microbial communities. Exis…
cs.LG2024
Revisiting K-mer Profile for Effective and Scalable Genome Representation Learning
Abdulkadir Celikkanat, Andres R. Masegosa, Thomas D. Nielsen
Obtaining effective representations of DNA sequences is crucial for genome analysis. Metagenomic binning, for instance, relies on genome representations to cluster complex mixtures…
cs.SI2024
Time to Cite: Modeling Citation Networks using the Dynamic Impact Single-Event Embedding Model
Nikolaos Nakis, Abdulkadir Celikkanat, Louis Boucherie +2
Understanding the structure and dynamics of scientific research, i.e., the science of science (SciSci), has become an important area of research in order to address imminent questi…