10 citations · 28 across the 8 of their papers we have counts for
5 papers · 1 filter
Microtubule Tracking in Electron Microscopy Volumes
Nils Eckstein, Julia Buhmann, Matthew Cook +1
We present a method for microtubule tracking in electron microscopy volumes. Our method first identifies a sparse set of voxels that likely belong to microtubules. Similar to prior…
Efficient 2D neuron boundary segmentation with local topological constraints
Thanuja D. Ambegoda, Matthew Cook
We present a method for segmenting neuron membranes in 2D electron microscopy imagery. This segmentation task has been a bottleneck to reconstruction efforts of the brain's synapti…
Synaptic partner prediction from point annotations in insect brains
Julia Buhmann, Renate Krause, Rodrigo Ceballos Lentini +4
High-throughput electron microscopy allows recording of lar- ge stacks of neural tissue with sufficient resolution to extract the wiring diagram of the underlying neural network. C…
TED: A Tolerant Edit Distance for Segmentation Evaluation
Jan Funke, Francesc Moreno-Noguer, Albert Cardona +1
In this paper, we present a novel error measure to compare a segmentation against ground truth. This measure, which we call Tolerant Edit Distance (TED), is motivated by two observ…
Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes
Jan Funke, Björn Andres, Fred Hamprecht +2
We present an approach for the joint segmentation and grouping of similar components in anisotropic 3D image data and use it to segment neural tissue in serial sections electron mi…