49 citations · 52 across the 4 of their papers we have counts for
4 papers
Multi-SpaM: a Maximum-Likelihood approach to Phylogeny reconstruction based on Multiple Spaced-Word Matches
Thomas Dencker, Chris-Andre Leimeister, Michael Gerth +3
Motivation: Word-based or `alignment-free' methods for phylogeny reconstruction are much faster than traditional approaches, but they are generally less accurate. Most of these met…
Estimating phylogenetic distances between genomic sequences based on the length distribution of k-mismatch common substrings
Burkhard Morgenstern, Svenja Schöbel, Chris-André Leimeister
Various approaches to alignment-free sequence comparison are based on the length of exact or inexact word matches between two input sequences. Haubold {\em et al.} (2009) showed ho…
Anchor points for genome alignment based on Filtered Spaced Word Matches
Chris-Andre Leimeister, Thomas Dencker, Burkhard Morgenstern
Alignment of large genomic sequences is a fundamental task in computational genome analysis. Most methods for genomic alignment use high-scoring local alignments as {\em anchor poi…
RasBhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison
Lars Hahn, Chris-André Leimeister, Rachid Ounit +2
Many algorithms for sequence analysis rely on word matching or word statistics. Often, these approaches can be improved if binary patterns representing match and don't-care positio…