11 citations · 17 across the 2 of their papers we have counts for
3 papers
Extreme Scale De Novo Metagenome Assembly
Evangelos Georganas, Rob Egan, Steven Hofmeyr +6
Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation o…
Meraculous-2D: Haplotype-sensitive Assembly of Highly Heterozygous genomes
Eugene Goltsman, Isaac Ho, Daniel Rokhsar
While many short read assemblers attempt to simplify the de Brujin graph by identifying and resolving variant-induced bubbles to produce a haploid mosaic result, this approach is o…
Meraculous2: fast accurate short-read assembly of large polymorphic genomes
Jarrod A. Chapman, Isaac Y. Ho, Eugene Goltsman +1
We present Meraculous2, an update to the Meraculous short-read assembler that includes (1) handling of allelic variation using "bubble" structures within the de Bruijn graph, (2) i…