361 citations · 786 across the 19 of their papers we have counts for
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q-bio.QM2025
PHD-MS: Multiscale Domain Identification for Spatial Transcriptomics via Persistent Homology
Perry Beamer, Zixuan Cang
Spatial transcriptomics (ST) measures gene expression at a set of spatial locations in a tissue. Communities of nearby cells that express similar genes form \textit{spatial domains…
q-bio.BM2025
OTMol: Robust Molecular Structure Comparison via Optimal Transport
Xiaoqi Wei, Xuhang Dai, Yaqi Wu +3
Root-mean-square deviation (RMSD) is widely used to assess structural similarity in systems ranging from flexible ligand conformers to complex molecular cluster configurations. Des…