116 citations · 239 across the 10 of their papers we have counts for
10 papers
QuickBind: A Light-Weight And Interpretable Molecular Docking Model
Wojtek Treyde, Seohyun Chris Kim, Nazim Bouatta +1
Predicting a ligand's bound pose to a target protein is a key component of early-stage computational drug discovery. Recent developments in machine learning methods have focused on…
OpenProteinSet: Training data for structural biology at scale
Gustaf Ahdritz, Nazim Bouatta, Sachin Kadyan +7
Multiple sequence alignments (MSAs) of proteins encode rich biological information and have been workhorses in bioinformatic methods for tasks like protein design and protein struc…
Renormalization for Philosophers
Jeremy Butterfield, Nazim Bouatta
We have two aims. The main one is to expound the idea of renormalization in quantum field theory, with no technical prerequisites (Sections 2 and 3). Our motivation is that renorma…
On emergence in gauge theories at the 't Hooft limit
Nazim Bouatta, Jeremy Butterfield
The aim of this paper is to contribute to a better conceptual understanding of gauge quantum field theories, such as quantum chromodynamics, by discussing a famous physical limit,…
Emergence and Reduction Combined in Phase Transitions
Jeremy Butterfield, Nazim Bouatta
In another paper (Butterfield 2011), one of us argued that emergence and reduction are compatible, and presented four examples illustrating both. The main purpose of this paper is…
Preheating in Dirac-Born-Infeld inflation
Nazim Bouatta, Anne-Christine Davis, Raquel H. Ribeiro +1
We study how the universe reheats following an era of chaotic Dirac-Born-Infeld inflation, and compare the rate of particle production with that in models based on canonical kineti…