5 papers
Biomedical reasoning in action: Multi-agent System for Auditable Biomedical Evidence Synthesis
Oskar Wysocki, Magdalena Wysocka, Mauricio Jacobo +2
We present M-Reason, a demonstration system for transparent, agent-based reasoning and evidence integration in the biomedical domain, with a focus on cancer research. M-Reason leve…
Accelerating Antibiotic Discovery with Large Language Models and Knowledge Graphs
Maxime Delmas, Magdalena Wysocka, Danilo Gusicuma +1
The discovery of novel antibiotics is critical to address the growing antimicrobial resistance (AMR). However, pharmaceutical industries face high costs (over $1 billion), long tim…
SylloBio-NLI: Evaluating Large Language Models on Biomedical Syllogistic Reasoning
Magdalena Wysocka, Danilo Carvalho, Oskar Wysocki +2
Syllogistic reasoning is crucial for Natural Language Inference (NLI). This capability is particularly significant in specialized domains such as biomedicine, where it can support…
Large Language Models, scientific knowledge and factuality: A framework to streamline human expert evaluation
Magdalena Wysocka, Oskar Wysocki, Maxime Delmas +2
The paper introduces a framework for the evaluation of the encoding of factual scientific knowledge, designed to streamline the manual evaluation process typically conducted by dom…
An LLM-based Knowledge Synthesis and Scientific Reasoning Framework for Biomedical Discovery
Oskar Wysocki, Magdalena Wysocka, Danilo Carvalho +5
We present BioLunar, developed using the Lunar framework, as a tool for supporting biological analyses, with a particular emphasis on molecular-level evidence enrichment for biomar…