3 papers
cs.LG2026
Evolution-Aware MSA Reasoning for Subsampling via Factor Graphs
Zhangzhi Xiong, Minzhang Li, Haotian Yu +6
Multiple Sequence Alignments (MSAs) provide protein language models with explicit evolutionary context, but their large depth makes subsampling unavoidable under limited token budg…
cs.AI2026
CryoACE: An Atom-centric Framework for Accurate and Automated Model Building in Cryo-EM
Minzhang Li, Mingrui Li, Weichen Qin +5
Protein automodeling from cryo-EM density maps faces unique challenges in enforcing physicochemical validity and managing conformational heterogeneity. Current solvers are often li…
cs.GR2026
SPREAD: Spatial-Physical REasoning via geometry Aware Diffusion
Minzhang Li, Kuixiang Shao, Xuebing Li +6
Automated 3D scene generation is pivotal for applications spanning virtual reality, digital content creation, and Embodied AI. While computer graphics prioritizes aesthetic layouts…