4 papers
Dysphagia Risk Stratification in Head and Neck Cancer via Two-Stage PRO-Clinical Stacking
Siyuan Zhao, Eric Ababio Anyimadu, Zachary G. Brumm +5
Dysphagia is a debilitating late effect of head and neck cancer (HNC) treatment, yet timely identification of at-risk patients remains challenging in survivorship care. Definitive…
Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories
Siyuan Zhao, Nafiul Nipu, Hossein Fathollahian +4
We present Loom, a spatial transcriptomics (ST) visual computing system to support the analysis of pseudo-temporal trajectories, comparative investigation across samples and region…
Attention-based ROI Discovery in 3D Tissue Images
Hossein Fathollahian, Siyuan Zhao, Nafiul Nipu +1
High-dimensional tissue imaging generates highly complex 3D data containing multiple biomarkers, making it challenging to identify biologically relevant regions without an expert u…
A Part-to-Whole Circular Cell Explorer
Siyuan Zhao, G. Elisabeta Marai
Spatial transcriptomics methods capture cellular measurements such as gene expression and cell types at specific locations in a cell, helping provide a localized picture of tissue…