3 papers
stat.AP2025
Large-scale spatial variable gene atlas for spatial transcriptomics
Jiawen Chen, Jinwei Zhang, Dongshen Peng +4
Spatial variable genes (SVGs) reveal critical information about tissue architecture, cellular interactions, and disease microenvironments. As spatial transcriptomics (ST) technolog…
stat.ME2025
The Nearest-Neighbor Derivative Process: Modeling Spatial Rates of Change in Massive Datasets
Jiawen Chen, Aritra Halder, Yun Li +2
Gaussian processes (GPs) are instrumental in modeling spatial processes, offering precise interpolation and prediction capabilities across fields such as environmental science and…
q-bio.GN2025
CellTypeAgent: Trustworthy cell type annotation with Large Language Models
Jiawen Chen, Jianghao Zhang, Huaxiu Yao +1
Cell type annotation is a critical yet laborious step in single-cell RNA sequencing analysis. We present a trustworthy large language model (LLM)-agent, CellTypeAgent, which integr…