7 citations · 12 across the 6 of their papers we have counts for
4 papers · 1 filter
TinkerCell: Modular CAD Tool for Synthetic Biology
Deepak Chandran, Frank T. Bergmann, Herbert M. Sauro
Synthetic biology brings together concepts and techniques from engineering and biology. In this field, computer-aided design (CAD) is necessary in order to bridge the gap between c…
An Optimization Algorithm for Finding Parameters for Bistability
Deepak Chandran, Herbert M. Sauro
Motivation: Many biochemical pathways are known, but the numerous parameters required to correctly explore the dynamics of the pathways are not known. For this reason, algorithms t…
Fundamental Dynamic Units: Feedforward Networks and Adjustable Gates
Herbert Sauro, Song Yang
The activation/repression of a given gene is typically regulated by multiple transcription factors (TFs) that bind at the gene regulatory region and recruit RNA polymerase (RNAP).…
Enumeration and Online Library of Mass-Action Reaction Networks
Anastasia C. Deckard, Frank T. Bergmann, Herbert M. Sauro
The aim of this work is to make available to the community a large collection of mass-action reaction networks of a given size for further research. The set is limited to what can…