3 papers
q-bio.BM2025
Predicting Protein-Nucleic Acid Flexibility Using Persistent Sheaf Laplacians
Nicole Hayes, Ekaterina Merkurjev, Guo-Wei Wei
Understanding the flexibility of protein-nucleic acid complexes, often characterized by atomic B-factors, is essential for elucidating their structure, dynamics, and functions, suc…
q-bio.BM2025
Persistent Sheaf Laplacian Analysis of Protein Flexibility
Nicole Hayes, Xiaoqi Wei, Hongsong Feng +2
Protein flexibility, measured by the B-factor or Debye-Waller factor, is essential for protein functions such as structural support, enzyme activity, cellular communication, and mo…
cs.LG2024
Graph-Based Bidirectional Transformer Decision Threshold Adjustment Algorithm for Class-Imbalanced Molecular Data
Nicole Hayes, Ekaterina Merkurjev, Guo-Wei Wei
Data sets with imbalanced class sizes, where one class size is much smaller than that of others, occur exceedingly often in many applications, including those with biological found…