6 citations · 8 across the 4 of their papers we have counts for
3 papers · 1 filter
Prefix-free parsing for merging big BWTs
Diego Diaz-Dominguez, Travis Gagie, Veronica Guerrini +5
When building Burrows-Wheeler Transforms (BWTs) of truly huge datasets, prefix-free parsing (PFP) can use an unreasonable amount of memory. In this paper we show how if a dataset c…
Indexing Strings with Utilities
Giulia Bernardini, Huiping Chen, Alessio Conte +5
Applications in domains ranging from bioinformatics to advertising feature strings that come with numerical scores (utilities). The utilities quantify the importance, interest, pro…
Lossy Compressor preserving variant calling through Extended BWT
Veronica Guerrini, Felipe A. Louza, Giovanna Rosone
A standard format used for storing the output of high-throughput sequencing experiments is the FASTQ format. It comprises three main components: (i) headers, (ii) bases (nucleotide…