2 papers
cs.LG2025
Relaxed Sequence Sampling for Diverse Protein Design
Joohwan Ko, Aristofanis Rontogiannis, Yih-En Andrew Ban +2
Protein design using structure prediction models such as AlphaFold2 has shown remarkable success, but existing approaches like relaxed sequence optimization (RSO) rely on single-pa…
cs.LG2025
Flash Invariant Point Attention
Andrew Liu, Axel Elaldi, Nicholas T Franklin +4
Invariant Point Attention (IPA) is a key algorithm for geometry-aware modeling in structural biology, central to many protein and RNA models. However, its quadratic complexity limi…