26 citations · 26 across the 3 of their papers we have counts for
3 papers
Motif Discovery through Predictive Modeling of Gene Regulation
Manuel Middendorf, Anshul Kundaje, Mihir Shah +3
We present MEDUSA, an integrative method for learning motif models of transcription factor binding sites by incorporating promoter sequence and gene expression data. We use a moder…
Predicting Genetic Regulatory Response Using Classification
Manuel Middendorf, Anshul Kundaje, Chris Wiggins +2
We present a novel classification-based method for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple organisms such as Saccha…
Predicting Genetic Regulatory Response using Classification: Yeast Stress Response
Manuel Middendorf, Anshul Kundaje, Chris Wiggins +2
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga…