3 papers
cs.LG2025
Surrogate modeling of Cellular-Potts Agent-Based Models as a segmentation task using the U-Net neural network architecture
Tien Comlekoglu, J. Quetzalcóatl Toledo-MarÃn, Tina Comlekoglu +4
The Cellular-Potts model is a powerful and ubiquitous framework for developing computational models for simulating complex multicellular biological systems. Cellular-Potts models (…
q-bio.QM2025
Generative diffusion model surrogates for mechanistic agent-based biological models
Tien Comlekoglu, J. Quetzalcoatl Toledo-MarÃn, Douglas W. DeSimone +3
Mechanistic, multicellular, agent-based models are commonly used to investigate tissue, organ, and organism-scale biology at single-cell resolution. The Cellular-Potts Model (CPM)…
cs.CV2025
Automated Multi-label Classification of Eleven Retinal Diseases: A Benchmark of Modern Architectures and a Meta-Ensemble on a Large Synthetic Dataset
Jerry Cao-Xue, Tien Comlekoglu, Keyi Xue +3
The development of multi-label deep learning models for retinal disease classification is often hindered by the scarcity of large, expertly annotated clinical datasets due to patie…