4 papers
Vitessce Link: A Mixed Reality and 2D Display Hybrid Approach for Visual Analysis of 3D Tissue Maps
Eric Mörth, Morgan L. Turner, Cydney Nielsen +14
Advances in spatial omics and high-resolution imaging enable the creation of three-dimensional (3D) tissue maps that capture cellular organization and interactions in situ. While t…
EasyVitessce: auto-magically adding interactivity to Scverse single-cell and spatial biology plots
Selena Luo, Mark S. Keller, Tabassum Kakar +2
EasyVitessce is a Python package that turns existing static Scanpy and SpatialData plots into interactive visualizations by virtue of adding a single line of Python code. The packa…
Interactive visualization of kidney micro-compartmental segmentations and associated pathomics on whole slide images
Mark S. Keller, Nicholas Lucarelli, Yijiang Chen +13
Application of machine learning techniques enables segmentation of functional tissue units in histology whole-slide images (WSIs). We built a pipeline to apply previously validated…
scellop: A Scalable Redesign of Cell Population Plots for Single-Cell Data
Thomas C. Smits, Nikolay Akhmetov, Tiffany S. Liaw +3
Summary: Cell population plots are visualizations showing cell population distributions in biological samples with single-cell data, traditionally shown with stacked bar charts. He…