2 citations · 2 across the 2 of their papers we have counts for
3 papers
q-bio.GN2016★ 2 cited
MetaPalette: A -mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation
David Koslicki, Daniel Falush
Metagenomic profiling is challenging in part because of the highly uneven sampling of the tree of life by genome sequencing projects and the limitations imposed by performing phylo…
q-bio.PE2014
Epidemic clones, oceanic gene pools and eco-LD in the free living marine pathogen Vibrio parahaemolyticus
Yujun Cui, Xianwei Yang, Xavier Didelot +12
We investigated global patterns of variation in 157 whole genome sequences of Vibrio parahaemolyticus, a free-living and seafood associated marine bacterium. Pandemic clones, respo…
q-bio.QM2013
A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data
John O'Brien, Xavier Didelot, Zamin Iqbal +3
Metagenomics provides a powerful new tool set for investigating evolutionary interactions with the environment. However, an absence of model-based statistical methods means that re…