269 citations · 1.1k across the 40 of their papers we have counts for
5 papers · 1 filter
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes
Jeremie S. Kim, Can Firtina, Meryem Banu Cavlak +5
AirLift is the first read remapping tool that enables users to quickly and comprehensively map a read set, that had been previously mapped to one reference genome, to another simil…
A Workload and Programming Ease Driven Perspective of Processing-in-Memory
Saugata Ghose, Amirali Boroumand, Jeremie S. Kim +2
Many modern and emerging applications must process increasingly large volumes of data. Unfortunately, prevalent computing paradigms are not designed to efficiently handle such larg…
RowHammer: A Retrospective
Onur Mutlu, Jeremie S. Kim
This retrospective paper describes the RowHammer problem in Dynamic Random Access Memory (DRAM), which was initially introduced by Kim et al. at the ISCA 2014 conference~\cite{rowh…
Dataplant: Enhancing System Security with Low-Cost In-DRAM Value Generation Primitives
Lois Orosa, Yaohua Wang, Ivan Puddu +13
DRAM manufacturers have been prioritizing memory capacity, yield, and bandwidth for years, while trying to keep the design complexity as simple as possible. DRAM chips do not carry…
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Can Firtina, Jeremie S. Kim, Mohammed Alser +4
Long reads produced by third-generation sequencing technologies are used to construct an assembly (i.e., the subject's genome), which is further used in downstream genome analysis.…