7 citations · 7 across the 3 of their papers we have counts for
6 papers
A Statistical Analysis of RNA Folding Algorithms Through Thermodynamic Parameter Perturbation
D. M. Layton, R. Bundschuh
Computational RNA secondary structure prediction is rather well established. However, such prediction algorithms always depend on a large number of experimentally measured paramete…
Finite Width Model Sequence Comparison
Ralf Bundschuh, Nicholas Chia
Sequence comparison is a widely used computational technique in modern molecular biology. In spite of the frequent use of sequence comparisons the important problem of assigning st…
Analytical description of finite size effects for RNA secondary structures
Tsunglin Liu, Ralf Bundschuh
The ensemble of RNA secondary structures of uniform sequences is studied analytically. We calculate the partition function for very long sequences and discuss how the cross-over le…
Glass transition in secondary structures formed by random RNA sequences
R. Bundschuh, T. Hwa
Formation of RNA secondary structures is an example of the sequence-structure problem omnipresent in biopolymers. A theoretical question of recent interest is whether a random RNA…
Asymmetric exclusion process and extremal statistics of random sequences
R. Bundschuh
An exact mapping is established between sequence alignment, one of the most commonly used tools of computational biology, and the asymmetric exclusion process, one of the few exact…
Delocalization transitions of semi-flexible manifolds
Ralf Bundschuh, Michael Lassig
Semi-flexible manifolds such as fluid membranes or semi-flexible polymers undergo delocalization transitions if they are subject to attractive interactions. We study manifolds with…