29 citations · 114 across the 6 of their papers we have counts for
6 papers
Extending the Relative Seriality Formalism for Interpretable Deep Learning of Normal Tissue Complication Probability Models
Tahir I. Yusufaly
We formally demonstrate that the relative seriality model of Kallman, et al. maps exactly onto a simple type of convolutional neural network. This approach leads to a natural inter…
Mapping quorum sensing onto neural networks to understand collective decision making in heterogeneous microbial communities
Tahir Yusufaly, James Q. Boedicker
Microbial communities frequently communicate via quorum sensing (QS), where cells produce, secrete, and respond to a threshold level of an autoinducer (AI) molecule, thereby modula…
Tunable inverse topological heterostructure utilizing
Matthew Brahlek, Nikesh Koirala, Jianpeng Liu +6
In typical topological insulator (TI) systems the TI is bordered by a non-TI insulator, and the surrounding conventional insulators, including vacuum, are not generally treated as…
Spatial Dispersal of Bacterial Colonies Induces a Dynamical Transition From Local to Global Quorum Sensing
Tahir I. Yusufaly, James Q. Boedicker
Bacteria communicate using external chemical signals called autoinducers (AI) in a process known as quorum sensing (QS). QS efficiency is reduced by both limitations of AI diffusio…
Arginine-Phosphate Salt Bridges Between Histones and DNA: Intermolecular Actuators that Control Nucleosome Architecture
Tahir I. Yusufaly, Yun Li, Gautam Singh +1
Structural bioinformatics and van der Waals density functional theory are combined to investigate the mechanochemical impact of a major class of histone-DNA interactions, namely th…
5-Methylation of Cytosine in CG:CG Base-Pair Steps: A Physicochemical Mechanism for the Epigenetic Control of DNA Nanomechanics
Tahir I. Yusufaly, Yun Li, Wilma K. Olson
Van der Waals density functional theory is integrated with analysis of a non-redundant set of protein-DNA crystal structures from the Nucleic Acid Database to study the stacking en…