2 papers
q-bio.GN2025
DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome
Pratik Dutta, Matthew Obusan, Rekha Sathian +8
Whole-genome sequencing (WGS) has revealed numerous non-coding short variants whose functional impacts remain poorly understood. Despite recent advances in deep-learning genomic ap…
q-bio.GN2024
DNABERT-S: Pioneering Species Differentiation with Species-Aware DNA Embeddings
Zhihan Zhou, Weimin Wu, Harrison Ho +5
We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space.…