112 citations · 167 across the 6 of their papers we have counts for
3 papers · 1 filter
Ococo: an online variant and consensus caller
Karel Břinda, Valentina Boeva, Gregory Kucherov
Motivation: Identifying genomic variants is an essential step for connecting genotype and phenotype. The usual approach consists of statistical inference of variants from alignment…
RNF: a general framework to evaluate NGS read mappers
Karel Břinda, Valentina Boeva, Gregory Kucherov
Aligning reads to a reference sequence is a fundamental step in numerous bioinformatics pipelines. As a consequence, the sensitivity and precision of the mapping tool, applied with…
Spaced seeds improve k-mer-based metagenomic classification
Karel Brinda, Maciej Sykulski, Gregory Kucherov
Metagenomics is a powerful approach to study genetic content of environmental samples that has been strongly promoted by NGS technologies. To cope with massive data involved in mod…